Ok, I tested it and it works 5 squares. 1. Check your schematics
I suspect you're using a geared motor 6mm DC3V.
Mine is draining 36mA@3v. On a single 3,7V battery full charge, you'll have 4,2V -> I used a 33Ω resistor (Orange/Orange/Black) for my test.2.Be sure you have the latest firmware on CFX. 3.Use R.I.C.E to check your config files.
I'm pretty sure the problem is there.
Once you connected your CFX, hit the "read settings"
button and go to Tab1 "General"
Check that you led strip settings are showing XXX0
Toggle the last bit -> Motor should start at "X" and stop at "O"
Well.. good luck